Supported Applications
Bowtie
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Description
an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.
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Usage
To list all executables provided by Bowtie, run:$ biogrids-list bowtie -
Installation
Use the following command to install this title with the CLI client:$ biogrids-cli install bowtieAvailable operating systems: Linux 64, OS X INTEL -
Primary Citation*
B. Langmead, C. Trapnell, M. Pop, and S. L. Salzberg. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology. 10(3): 25.
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*Full citation information available through
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Keywords
ChIP-Sequencing, DNA-Sequencing, High-throughput sequencing, Read Alignment, RNA-Sequencing, WGS Analysis
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Default Versions
Linux 64: 1.2.3 (179.3 MB)
OS X INTEL: 1.2.3 (30.3 MB) -
Other Versions
Linux 64:
1.0.0 (24.0 MB) , 1.1.2 (36.4 MB) , 1.2.1.1 (140.6 MB) , 1.2.2 (139.5 MB) -
OS X INTEL:
1.0.0 (18.2 MB) , 1.1.2 (24.1 MB) , 1.2.1.1 (29.5 MB) , 1.2.2 (29.5 MB)
Developers
Ben Langmead, Cole Trapnell