Search
Button for mobile navigation
Join us

Supported Applications

CellBender

  • Description

    a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

  • Usage

    To list all executables provided by CellBender, run: $ biogrids-list cellbender Copy to clipboard

  • Usage Notes

    CellBender in BioGrids provides the following callable executables:

    cellbender

    python.cellbender

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install cellbender Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    S. J. Fleming, J. C. Marioni, and M. Babadi. 2019. CellBender remove-background: a deep generative model for unsupervised removal of background noise from scRNA-seq datasets. bioRxiv. 791699.


    • *Full citation information available through

  • Keywords

    scRNA-Seq Analysis

  • Default Versions

    Linux 64:  0.3.0 (4.0 GB)
    OS X INTEL:  0.3.0 (5.7 GB)

  • Other Versions

      Linux 64:

      0.2.0 (7.2 GB)

    • OS X INTEL:

      0.2.0 (3.4 GB)
Scroll