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FlashPCA

  • Description

    performs fast principal component analysis (PCA) of single nucleotide polymorphism (SNP) data, similar to smartpca from EIGENSOFT (http://www.hsph.harvard.edu/alkes-price/software/) and shellfish (https://github.com/dandavison/shellfish). FlashPCA is based on the https://github.com/yixuan/spectra/ library.

  • Usage

    To list all executables provided by FlashPCA, run: $ biogrids-list flashpca Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install flashpca Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    G. Abraham, Y. Qiu, and M. Inouye. 2017. FlashPCA2: principal component analysis of Biobank-scale genotype datasets. Bioinformatics (Oxford, England). 33(17): 2776-2778.


    • *Full citation information available through

  • Citation Note

    Please cite:


    G. Abraham, Y. Qiu, and M. Inouye, ``FlashPCA2: principal component analysis of biobank-scale genotype datasets'', (2017) Bioinformatics 33(17): 2776-2778. doi:10.1093/bioinformatics/btx299 (bioRxiv preprint https://doi.org/10.1101/094714)

  • Keywords

    Variant Analysis

  • Default Versions

    Linux 64:  2.0 (4.2 MB)
    OS X INTEL:  2.0 (1.2 MB)

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