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humann3

  • Description

    is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads).

  • Usage

    To list all executables provided by humann3, run: $ biogrids-list humann3 Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install humann3 Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    F. Beghini, L. J. McIver, A. Blanco-Míguez, L. Dubois, F. Asnicar, S. Maharjan, A. Mailyan, P. Manghi, M. Scholz, A. M. Thomas, M. Valles-Colomer, G. Weingart, Y. Zhang, M. Zolfo, C. Huttenhower, E. A. Franzosa, and N. Segata. 2021. Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3. eLife. 10.


    • *Full citation information available through

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