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Peakachu

  • Description

    an acronym that standands for Unveil Hi-C Anchors and Peaks, Peakachu takes genome-wide contact data as input and returns coordinates of likely interactions such as chromatin loops.

  • Usage

    To list all executables provided by Peakachu, run: $ biogrids-list peakachu Copy to clipboard

  • Usage Notes

    Peakachu provides a single callable executable: peakachu

    It is encapsulated with its own python distribution. This python is provided as: python.peakachu

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install peakachu Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    T. J. Salameh, X. Wang, F. Song, B. Zhang, S. M. Wright, C. Khunsriraksakul, Y. Ruan, and A. Y. F.. 2020. A supervised learning framework for chromatin loop detection in genome-wide contact maps. Nat Commun.. 11(1): 3428.


    • *Full citation information available through

  • Keywords

    Hi-C

  • Default Versions

    Linux 64:  1.1.4 (1.2 GB)
    OS X INTEL:  1.1.4 (985.3 MB)

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