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Supported Applications

Sailfish

  • Description

    enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms.

  • Usage

    To list all executables provided by Sailfish, run: $ biogrids-list sailfish Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install sailfish Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    R. Patro and S. M. M. &. C. Kingsford. 2014. Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms. Nature Biotechnology. 32(5): 462-464.


    • *Full citation information available through

  • Keywords

    RNA-Sequencing

  • Default Versions

    Linux 64:  0.10.0 (10.5 MB)
    OS X INTEL:  0.10.0 (4.0 MB)

  • Developers

    Carl Kingsford, Robert Patro, Stephen M Mount

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