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Salmon

  • Description

    a tool for quantifying the expression of transcripts using RNA-seq data. Salmon uses algorithms to provide very quick, accurate expression estimates using little memory and performs inference using an expressive and realistic model of RNA-seq data that takes into account experimental attributes and biases commonly observed in real RNA-seq data.

  • Usage

    To list all executables provided by Salmon, run: $ biogrids-list salmon Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install salmon Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    R. Patro, G. Duggal, M. I. Love, and R. A. I. &. C. Kingsford. 2017. Salmon provides fast and bias-aware quantification of transcript expression. Nature Methods. 14(4): 417-419.


    • *Full citation information available through

  • Keywords

    RNA-Sequencing

  • Default Versions

    Linux 64:  1.10.1 (36.5 MB)
    OS X INTEL:  1.10.1 (15.7 MB)

  • Other Versions

      Linux 64:

      0.8.2 (15.9 MB) , 0.9.1 (16.1 MB) , 1.5.1 (36.2 MB)

    • OS X INTEL:

      0.9.1 (8.9 MB) , 1.5.1 (14.1 MB)

  • Developers

    Carl Kingsford, Robert Patro

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