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TGS-GapCloser

  • Description

    A gap-closing software tool that uses error-prone long reads generated by third-generation-sequence techniques (Pacbio, Oxford Nanopore, etc.) or preassembled contigs to fill N-gap in the genome assembly.

  • Usage

    To list all executables provided by TGS-GapCloser, run: $ biogrids-list tgsgapcloser Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install tgsgapcloser Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    M. Xu, L. Guo, S. Gu, O. Wang, R. Zhang, B. A. Peters, G. Fan, X. Liu, X. Xu, L. Deng, and Y. Zhang. 2020. TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads. GigaScience. 9(9).


    • *Full citation information available through

  • Keywords

    Genome Assembly

  • Default Versions

    Linux 64:  1.2.1 (45.2 MB)
    OS X INTEL:  1.2.1 (13.8 MB)

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