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Supported Applications

UMI-tools

  • Description

    tools for dealing with Unique Molecular Identifiers (UMIs)/Random Molecular Tags (RMTs) and single cell RNA-Seq cell barcodes.

  • Usage

    To list all executables provided by UMI-tools, run: $ biogrids-list umi_tools Copy to clipboard

  • Usage Notes

    UMI-Tools in BioGrids provides the following executable:

    umi_tools

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install umi_tools Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    T. Smith, A. Heger, and Sudbery I. 2017. UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy. Genome research. 27(3): 491-499.


    • *Full citation information available through

  • Keywords

    scRNA-Seq Analysis

  • Default Versions

    Linux 64:  1.1.2 (418.0 MB)
    OS X INTEL:  1.1.2 (343.0 MB)

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