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Supported Applications

velocyto

  • Description

    a library for the analysis of RNA velocity.

  • Usage

    To list all executables provided by velocyto, run: $ biogrids-list velocyto Copy to clipboard

  • Usage Notes

    velocyto in the BioGrids environment includes its own python distribution.

    It includes the following executables:

    velocyto

    python.velocyto

    jupyter.velocyto

    jupyter-lab.velocyto

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install velocyto Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    G. L. Manno, R. Soldatov, A. Zeisel, E. Braun, H. Hochgerner, V. Petukhov, K. Lidschreiber, M. E. Kastriti, P. Lönnerberg, A. Furlan, J. Fan, L. E. Borm, Z. Liu, D. van Bruggen, J. Guo, X. He, R. Barker, E. Sundström, G. Castelo-Branco, P. Cramer, I. Adameyko, and S. L. &. P. V. Kharchenko. 2018. RNA velocity of single cells. Nature. 560: 494-498.


    • *Full citation information available through

  • Keywords

    scRNA-Seq Analysis

  • Default Versions

    Linux 64:  0.17 (1.3 GB)
    OS X INTEL:  0.17 (1.2 GB)

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