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Supported Applications

wot

  • Description

    a software package for analyzing snapshots of developmental processes in scRNA-seq data.

  • Usage

    To list all executables provided by wot, run: $ biogrids-list wot Copy to clipboard

  • Usage Notes

    WOT within the BioGrids environment provides the following commands:

    wot

    python.wot

    jupyter.wot

    jupyter-lab.wot

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install wot Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    G. Schiebinger, J. Shu, M. Tabaka, B. Cleary, Subramanian V, A. Solomon, J. Gould, S. Liu, S. Lin, P. Berube, L. Lee, J. Chen, J. Brumbaugh, P. Rigollet, K. Hochedlinger, R. Jaenisch, A. Regev, and E. S. Lander. 2019. Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming. Cell. 176(4): 928-943.e22.


    • *Full citation information available through

  • Keywords

    scRNA-Seq Analysis

  • Default Versions

    Linux 64:  1.0.8 (3.1 GB)
    OS X INTEL:  1.0.8 (1.8 GB)

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