workshops.md
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Before attending a workshop, register for a BioGrids account then download and activate the BioGrids Installer software --> [Preworkshop Setup](pre_workshop)
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-### Workshops
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----
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-Upcoming workshops
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+### Upcoming Workshops
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**May 31: Using BioGrids for RNA-Seq on AWS and your Laptop** [Register here](https://docs.google.com/forms/d/e/1FAIpQLSes1GHVeCz8SnPYRibXGWIeox6XagOTJnrWXbNqvdCEPy0Asw/viewform?usp=sf_link)
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This workshop is features Nicholas LeCompte from BCH Research Computing's Bioinformatics and Genomics Team. This 2-hour course is designed for biomedical researchers who have an interest in leveraging R for their omics research, but don't have experience with R.
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+
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+### Completed Workshops
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### Using BioGrids for RNA-Seq on AWS and Your Laptop
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May 15, 2019 - 10:30am | TMEC 106 | [Register Here](https://docs.google.com/a/hkl.hms.harvard.edu/forms/d/e/1FAIpQLSes1GHVeCz8SnPYRibXGWIeox6XagOTJnrWXbNqvdCEPy0Asw/closedform)
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+---
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+### Workshop Details
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+
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+Using BioGrids for RNA-Seq on AWS and Your Laptop
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+
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Complete workshop data files and scripts: [biogrids_workshop.tar.gz](downloads/biogrids_workshop.tar.gz)
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Workshop presentation: [Powerpoint](downloads/BioGrids_AWS_RNA_Seq_May_2019.pptx) [PDF](downloads/BioGrids_AWS_RNA_Seq_May_2019.pdf)
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---
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-### Install and activate BioGrids CLI
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-
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+### 1: Install and activate BioGrids CLI
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Download and install biogrids CLI client then run:
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./biogrids activate biogrid-production jvinent1 70rYFTDnmCr93VUklfbf1s3M4jdyC9bFVYHew==
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```
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-### Install software with BioGrids
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+### 2: Install software with BioGrids
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```
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./biogrids install fastqc trimmomatic samtools star subread igv
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./biogrids installed
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```
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-### Download and uncompress tutorial files
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+### 3: Download and uncompress tutorial files
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```
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cd # make sure we are in home dir
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cd biogrids_workshop
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```
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-### Run RNA-Seq workflow
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+### 4: Run RNA-Seq workflow
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```
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cd biogrids_workshop