5a40b4a94441a82d4ed54b547ef4f4949492dfaf
workshops.md
| ... | ... | @@ -79,6 +79,44 @@ May 15, 2019 - 10:30am | TMEC 106 | [Register Here](https://docs.google.co |
| 79 | 79 | |
| 80 | 80 | Complete workshop data files and scripts: [biogrids_workshop.tar.gz](downloads/biogrids_workshop.tar.gz) |
| 81 | 81 | |
| 82 | +--- |
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| 83 | + |
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| 84 | +### Install and activate BioGrids CLI |
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| 85 | + |
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| 86 | + |
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| 87 | +Download and install biogrids CLI client then run: |
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| 88 | +``` |
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| 89 | +biogrids activate <site name> <user name> <activation key> |
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| 90 | +``` |
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| 91 | +#### Linux |
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| 92 | +``` |
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| 93 | +curl -kLO https://biogrids.org/wiki/downloads/biogrids-1.0.694-Linux.tgz |
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| 94 | +tar zxf biogrids-1.0.694-Linux.tgz |
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| 95 | +cd biogrids-1.0.694-Linux |
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| 96 | +``` |
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| 97 | + |
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| 98 | +#### OSX |
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| 99 | +``` |
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| 100 | +curl -kLO https://biogrids.org/wiki/downloads/biogrids-1.0.694-Darwin.tgz |
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| 101 | +tar zxf biogrids-1.0.694-Darwin.tgz |
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| 102 | +cd biogrids-1.0.694-Darwin |
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| 103 | +``` |
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| 104 | + |
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| 105 | +#### Run biogrids |
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| 106 | +``` |
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| 107 | +./biogrids activate biogrid-production jvinent1 70rYFTDnmCr93VUklfbf1s3M4jdyC9bFVYHew== |
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| 108 | +./biogrids install fastqc trimmomatic samtools star subread igv |
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| 109 | +``` |
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| 110 | + |
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| 111 | +Change back to home directory |
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| 112 | +``` |
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| 113 | +cd |
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| 114 | +``` |
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| 115 | + |
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| 116 | +### Install software with BioGrids |
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| 117 | +### Download and uncompress tutorial files |
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| 118 | +### Run RNA-Seq workflow |
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| 119 | + |
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| 82 | 120 | Download then uncompress: |
| 83 | 121 | |
| 84 | 122 | ``` |