6896788bdfc7daba8bd6084cfb4d46f70ba8bf97
Home.md
| ... | ... | @@ -8,7 +8,7 @@ |
| 8 | 8 | |
| 9 | 9 | # BioGrids GUI Installation Manager |
| 10 | 10 | |
| 11 | -[Download the BioGrids Installation Manager](downloads.md), GUI or CLI. |
|
| 11 | +[Download the BioGrids Installation Manager](downloads.md), GUI or CLI. |
|
| 12 | 12 | |
| 13 | 13 | |
| 14 | 14 | |
| ... | ... | @@ -40,7 +40,17 @@ cat /programs//i386-mac/biogrids_i386-mac |
| 40 | 40 | #### Get version and override info: |
| 41 | 41 | |
| 42 | 42 | ``` |
| 43 | -biogrids-info -l star |
|
| 43 | +$ biogrids-info -l samtools |
|
| 44 | + |
|
| 45 | + |
|
| 46 | + Version information for: /programs/x86_64-linux/samtools |
|
| 47 | + |
|
| 48 | +Default version: 1.14 |
|
| 49 | +In-use version: 1.14 |
|
| 50 | + |
|
| 51 | +Installed versions: 1.14 1.13 1.12 1.10 1.9 1.8 1.7 1.6 1.5 1.4.1 1.3.1 1.3 0.1.19 |
|
| 52 | +Other available versions: 1.13 1.12 1.10 1.9 1.8 1.7 1.6 1.5 1.4.1 1.3.1 1.3 0.1.19 |
|
| 53 | +Overrides use this shell variable: SAMTOOLS_X |
|
| 44 | 54 | ``` |
| 45 | 55 | |
| 46 | 56 | |
| ... | ... | @@ -48,9 +58,24 @@ biogrids-info -l star |
| 48 | 58 | #### Get list of executables for a title: |
| 49 | 59 | |
| 50 | 60 | ``` |
| 51 | -biogrids-list star |
|
| 61 | +$ biogrids-list samtools |
|
| 62 | + |
|
| 63 | +ace2sam md5fa samtools.pl |
|
| 64 | +blast2sam.pl md5sum-lite seq_cache_populate.pl |
|
| 65 | +bowtie2sam.pl novo2sam.pl soap2sam.pl |
|
| 66 | +export2sam.pl plot-ampliconstats wgsim |
|
| 67 | +fasta-sanitize.pl plot-bamstats wgsim_eval.pl |
|
| 68 | +interpolate_sam.pl psl2sam.pl zoom2sam.pl |
|
| 69 | +maq2sam-long sam2vcf.pl |
|
| 70 | +maq2sam-short samtools |
|
| 52 | 71 | ``` |
| 53 | 72 | |
| 73 | +#### Call executables directly: |
|
| 74 | + |
|
| 75 | +``` |
|
| 76 | +$ samtools |
|
| 77 | + |
|
| 78 | +``` |
|
| 54 | 79 | |
| 55 | 80 | |
| 56 | 81 | More detailed information is available in the right hand side links. |