client_usage.md
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-## BioGrids installation client - Usage
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+## Using the BioGrids GUI installation client
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**Instructions for installing the BioGrids software installation client can be found here** --> [Installation Instructions](client_install)
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@@ -7,25 +7,45 @@ The BioGrids software installation client is a GUI-based installer for the BioGr
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![installed](images/client_install.png)
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-The client GUI displays software 'Collections' on the right panel with folder icons under the 'Packages' heading. These Collections control the list of titles displayed in the center 'main' panel.
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+The client GUI displays software in the left panel with folder icons under the 'Packages' and BioGrids headings. These control the list of titles displayed in the center 'main' panel.
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-The first of two of these 'Collections' are shortcut meta-collections of the local machine. The first is the currently installed titles. The second icon, Updates, shows updates available from BioGrids. 'Pending' is a collection of pending installs and removals. Below these shortcuts are packages are grouped by primary scientific uses. Installation status is also indicated in theses collections.
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+Under Packages:
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+**Installed**: currently installed titles
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+**Updates**: updates available from BioGrids
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+**Pending**: pending installs and removals
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+**All**: Every available package
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+Below the Packages folders are collections grouped by primary scientific uses. These collections may differ depending on your account.
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+They are shortcuts to groups of related software.
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Information about each title, including a description and links to documentation are shown in the upper right panel when that title is selected in the main pane.
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Once packages have been configured for installation and/or removal by selecting their checkbox, clicking the 'Apply Changes' button will perform update the titles, adding pending installations and removing pending deletions.
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-### Example : Installing Albula
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-Check the box to select Albula, then click the 'Apply Changes' button.
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-Notice the text turns green for pending installations. Pending updates are Orange.
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-![apply](images/client_apply2.png)
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+### Example : Installing FastQC
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+Search for FastQC by typing in the Seach box, or click on All package list and scroll to find it.
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+Check the box to select FastQC, then click the 'Apply Changes' button.
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+Notice the text turns green for pending installations.
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+![Install FastQC](images/client_apply2.png)
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+Click the Apply Changes button and FastQC will be installed.
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+Notice that a version of Java is also installed. FastQC depends on Java.
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+After installation is complete, click on the Installed list to see FastQC listed.
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+### Example : Removing FastQC
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-### Example : Removing Albula
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-Uncheck the box for Albula. Removals are shown in red text.
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-![apply](images/client_remove1.png)
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+In the Installed list, uncheck the box for FastQC. Notice the title turns red indicating it will be removed.
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+Click Apply Changes. FastQC will be removed.
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-Click apply changes. Albula will be removed.
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-![apply](images/client_remove2.png)
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+![Remove FastQC](images/remove_fastqc.png)
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### Version selection
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images/client_apply2.png
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