ac6d15eaab7613bfe6de76de52cb4233eab931f2
version_management.md
| ... | ... | @@ -22,18 +22,20 @@ When set to FILE (either form) logging is written to a FILE. |
| 22 | 22 | |
| 23 | 23 | If no path to file is given then the default is $(HOME)/${GRID}_capsule_log_${HOSTNAME}. |
| 24 | 24 | |
| 25 | -If set |
|
| 25 | +When set to BOTH|BOTH:path logging is sent to a file as above and also to BioGrids servers. Capsule activity sent to BioGrids is deidentified and encrypted. |
|
| 26 | 26 | |
| 27 | -If se |
|
| 28 | -(first) or to BOTH a FILE and AWS (second). Is this making sense?? |
|
| 27 | +Sample Entries in the log file have this form: |
|
| 29 | 28 | |
| 29 | +hostname BIOGRIDS osx-10.13.6 biogrid-production_1.0.695 newrc_sh CA5BBF5F-F41E-4CFA-8AA4-37182C9DD366 /programs/i386-mac/samtools/1.10/bin/samtools 0 0 |
|
| 30 | +hostname BIOGRIDS osx-10.13.6 biogrid-production_1.0.695 newrc_sh 3355483F-A04B-4575-868F-88D22173C957 /programs/i386-mac/python/3.6.5/bin/python 0 0 |
|
| 30 | 31 | |
| 31 | -Entries in the log file have this form: |
|
| 32 | +The path to the executable provides the architecture, name of the BioGrids title, version used and name of the executable called. |
|
| 32 | 33 | |
| 33 | -jjv5 MB-Broken BIOGRIDS osx-10.13.6 biogrid-production_1.0.695 newrc_sh CA5BBF5F-F41E-4CFA-8AA4-37182C9DD366 /programs/i386-mac/samtools/1.10/bin/samtools 0 0 |
|
| 34 | -jjv5 MB-Broken BIOGRIDS osx-10.13.6 biogrid-production_1.0.695 newrc_sh 3355483F-A04B-4575-868F-88D22173C957 /programs/i386-mac/python/3.6.5/bin/python 0 0 |
|
| 35 | 34 | |
| 36 | - |
|
| 35 | +## Finding Available Versions |
|
| 36 | + |
|
| 37 | +The biogrids-info tool can be used to list all available versions of a title whether they are installed on your platform or not. |
|
| 38 | + |
|
| 37 | 39 | |
| 38 | 40 | $ biogrids-info -l samtools |
| 39 | 41 | |
| ... | ... | @@ -49,8 +51,6 @@ Other available versions: 1.9 1.8 1.7 1.6 1.5 1.4.1 1.3.1 1.3 0.1.19 |
| 49 | 51 | |
| 50 | 52 | Overrides use this shell variable: SAMTOOLS_X |
| 51 | 53 | |
| 52 | -[ch199734@e2 ~]$ |
|
| 53 | - |
|
| 54 | 54 | |
| 55 | 55 | ## Activating Older Versions |
| 56 | 56 |