c06be4287e457f3ad5a826da76f2303c262dc654
faq.md
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| 1 | 1 | ## BioGrids FAQ |
| 2 | 2 | |
| 3 | -## How do I confirm the version of R I am using? |
|
| 3 | +## R version confirmation |
|
| 4 | 4 | |
| 5 | +--- |
|
| 6 | +From the command line, check your path: |
|
| 7 | + |
|
| 8 | +``` |
|
| 9 | +$ R --sbwhich |
|
| 10 | + |
|
| 11 | +or |
|
| 12 | + |
|
| 13 | +$ which R |
|
| 14 | +``` |
|
| 15 | + |
|
| 16 | +Use the biogrids-info utility: |
|
| 17 | + |
|
| 18 | +``` |
|
| 19 | +$ biogrids-info -l r |
|
| 20 | + Version information for: /programs/i386-mac/r |
|
| 21 | + |
|
| 22 | +Default version: 3.3.2 |
|
| 23 | +In-use version: 3.6.2 |
|
| 24 | + |
|
| 25 | +Installed versions: 3.6.2 |
|
| 26 | +Other available versions: 3.6.2 3.5.1 3.4.2 3.2.1 3.2.2 3.0.3 2.13.0 2.11.1 |
|
| 27 | +Overrides use this shell variable: R_M |
|
| 28 | +``` |
|
| 29 | + |
|
| 30 | +Check the version override variable: |
|
| 31 | + |
|
| 32 | +``` |
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| 33 | +$ echo $R_M |
|
| 34 | +3.6.2 |
|
| 35 | + |
|
| 36 | +``` |
|
| 5 | 37 | |
| 6 | 38 | Within your R code: |
| 7 | 39 | |
| 8 | 40 | ``` |
| 9 | 41 | > system("type R") |
| 10 | 42 | R is /programs/x86_64-linux/r/3.6.2/bin/R |
| 11 | -> library(ggplot2) |
|
| 12 | -> packageVersion("ggplot2") |
|
| 13 | -[1] '3.2.1' |
|
| 14 | 43 | |
| 15 | 44 | ``` |
| 16 | 45 |