workshops.md
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1: Genomes / Load Genome from File... (chr1_MOV10.fa)
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2: File / Load from file... (chr1_MOV10.gtf)
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3: File / Load from file... ( .bam file)
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+## Genome Resources
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+ENCODE data files can be found here for CalTech RNA-Seq :
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+http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCaltechRnaSeq/
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+Use this bam file: wgEncodeCaltechRnaSeqK562R1x75dAlignsRep1V2
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+Region of MOV10 gene: chr1:113,214,934-113,243,900
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+How to download whole genome:
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+ - UCSC ftp site: hgdownload.cse.ucsc.edu
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+ - UCSC web site: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/chromosomes/
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+ - UCSC recommends using an ftp client for large file downloads
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+ - chr1 is only 70M
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