a comprehensive update to Shaun Purcell's PLINK command-line program -- a whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses.
a trainable, memory-efficient, and GPU-friendly PyTorch reproduction of DeepMind's AlphaFold 2.
a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.
a free software environment for statistical computing and graphics.
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
provides flexible off-instrument reanalysis of Xenium In Situ data, including relabeling transcripts, resegmenting cells, importing custom segmentation data, and renaming datasets.
