an implementation of the inference pipeline of AlphaFold using a completely new model that was entered in CASP14.
is an R package for fast, comprehensive analysis of Adaptive Immune Receptor Repertoire (AIRR) data, providing tools to load, explore, and quantify immune repertoires from bulk and single-cell V(D)J sequencing.
(Sequence Alignment/Map) a generic format for storing large nucleotide sequence alignments that provides various utilities for manipulating alignments, including sorting, merging, indexing and generating alignments in a per-position format.
(Open Java Development Kit) a free and open source implementation of the Java Platform, Standard Edition (Java SE).
a comprehensive update to Shaun Purcell's PLINK command-line program -- a whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses.
a trainable, memory-efficient, and GPU-friendly PyTorch reproduction of DeepMind's AlphaFold 2.
a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
provides flexible off-instrument reanalysis of Xenium In Situ data, including relabeling transcripts, resegmenting cells, importing custom segmentation data, and renaming datasets.
