Jul 27 2026
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AmberTools
a suite of programs that allows users to carry out molecular dynamics simulations, particularly on biomolecules. The suite can be used to carry out complete (non-periodic) molecular dynamics simulations (using NAB) with either explicit water or generalized Born solvent models. The independently developed packages work well by themselves, and with Amber itself.
Updated versions:
26 | Linux 64
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Jul 27 2026
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HDF5
s a data model, library, and file format for storing and managing data.
Updated versions:
1.12.1 | OS X INTEL
1.12.1 | Linux 64
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Jul 24 2026
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Fiji
an image processing package. It can be described as a distribution of ImageJ (and ImageJ2) together with Java, Java 3D and a lot of plugins organized into a coherent menu structure. Fiji compares to ImageJ as Ubuntu compares to Linux.
Updated versions:
2.16.0 | OS X INTEL
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Jul 23 2026
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BLAST+
a suite of BLAST (Basic Local Alignment Search Tool) tools that utilizes the NCBI C++ Toolkit with a number of performance and feature improvements over the legacy BLAST applications.
Updated versions:
2.17.0 | Linux 64
2.17.0 | OS X INTEL
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Jul 14 2026
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Fiji
an image processing package. It can be described as a distribution of ImageJ (and ImageJ2) together with Java, Java 3D and a lot of plugins organized into a coherent menu structure. Fiji compares to ImageJ as Ubuntu compares to Linux.
Updated versions:
2.16.0 | Linux 64
2.16.0_x86 | OS X INTEL
2.16.0_arm | OS X INTEL
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Jul 14 2026
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BCFtools
a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.
Updated versions:
1.24 | Linux 64
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Jul 14 2026
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Bowtie
an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.
Updated versions:
1.3.1 | Linux 64
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Jul 14 2026
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BCFtools
a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.
Updated versions:
1.24 | OS X INTEL
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Jul 14 2026
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Bowtie
an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.
Updated versions:
1.3.1 | OS X INTEL
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Jul 10 2026
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SAMtools
(Sequence Alignment/Map) a generic format for storing large nucleotide sequence alignments that provides various utilities for manipulating alignments, including sorting, merging, indexing and generating alignments in a per-position format.
Updated versions:
1.24 | Linux 64
1.24_x86 | OS X INTEL
1.24 | OS X INTEL
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Jul 08 2026
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BioGrids Installer
Installation Client for the BioGrids software collection.
Updated versions:
2.16.0 | Linux 64
2.16.0 | OS X INTEL
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